hdmf_common_sparse

class ConfiguredBaseModel(*, hdf5_path: str | None = None, object_id: str | None = None)

Bases: BaseModel

Create a new model by parsing and validating input data from keyword arguments.

Raises [ValidationError][pydantic_core.ValidationError] if the input data cannot be validated to form a valid model.

self is explicitly positional-only to allow self as a field name.

model_config: ClassVar[ConfigDict] = {'arbitrary_types_allowed': True, 'extra': 'forbid', 'strict': False, 'use_enum_values': True, 'validate_assignment': True, 'validate_default': True}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

hdf5_path: str | None

object_id: str | None

model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}

A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

model_fields: ClassVar[dict[str, FieldInfo]] = {'hdf5_path': FieldInfo(annotation=Union[str, NoneType], required=False, default=None, description='The absolute path that this object is stored in an NWB file'), 'object_id': FieldInfo(annotation=Union[str, NoneType], required=False, default=None, description='Unique UUID for each object')}

Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

This replaces Model.__fields__ from Pydantic V1.

class LinkMLMeta(root: RootModelRootType = PydanticUndefined)

Bases: RootModel

Create a new model by parsing and validating input data from keyword arguments.

Raises [ValidationError][pydantic_core.ValidationError] if the input data cannot be validated to form a valid model.

self is explicitly positional-only to allow self as a field name.

root: Dict[str, Any]

model_config: ClassVar[ConfigDict] = {'frozen': True}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}

A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

model_fields: ClassVar[dict[str, FieldInfo]] = {'root': FieldInfo(annotation=Dict[str, Any], required=False, default={})}

Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

This replaces Model.__fields__ from Pydantic V1.

class CSRMatrix(*, hdf5_path: str | None = None, object_id: str | None = None, name: str, shape: int | None = None, indices: CSRMatrixIndices, indptr: CSRMatrixIndptr, data: CSRMatrixData)

Bases: ConfiguredBaseModel

a compressed sparse row matrix

Create a new model by parsing and validating input data from keyword arguments.

Raises [ValidationError][pydantic_core.ValidationError] if the input data cannot be validated to form a valid model.

self is explicitly positional-only to allow self as a field name.

linkml_meta: ClassVar[LinkMLMeta] = LinkMLMeta(root={'from_schema': 'hdmf-common.sparse', 'tree_root': True})

name: str

shape: int | None

indices: CSRMatrixIndices

indptr: CSRMatrixIndptr

data: CSRMatrixData

model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}

A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

model_config: ClassVar[ConfigDict] = {'arbitrary_types_allowed': True, 'extra': 'forbid', 'strict': False, 'use_enum_values': True, 'validate_assignment': True, 'validate_default': True}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

model_fields: ClassVar[dict[str, FieldInfo]] = {'data': FieldInfo(annotation=CSRMatrixData, required=True, description='values in the matrix'), 'hdf5_path': FieldInfo(annotation=Union[str, NoneType], required=False, default=None, description='The absolute path that this object is stored in an NWB file'), 'indices': FieldInfo(annotation=CSRMatrixIndices, required=True, description='column indices'), 'indptr': FieldInfo(annotation=CSRMatrixIndptr, required=True, description='index pointer'), 'name': FieldInfo(annotation=str, required=True), 'object_id': FieldInfo(annotation=Union[str, NoneType], required=False, default=None, description='Unique UUID for each object'), 'shape': FieldInfo(annotation=Union[int, NoneType], required=False, default=None, description='the shape of this sparse matrix')}

Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

This replaces Model.__fields__ from Pydantic V1.

class CSRMatrixIndices(*, hdf5_path: str | None = None, object_id: str | None = None, name: Literal['indices'] = 'indices')

Bases: ConfiguredBaseModel

column indices

Create a new model by parsing and validating input data from keyword arguments.

Raises [ValidationError][pydantic_core.ValidationError] if the input data cannot be validated to form a valid model.

self is explicitly positional-only to allow self as a field name.

linkml_meta: ClassVar[LinkMLMeta] = LinkMLMeta(root={'from_schema': 'hdmf-common.sparse'})

name: Literal['indices']

model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}

A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

model_config: ClassVar[ConfigDict] = {'arbitrary_types_allowed': True, 'extra': 'forbid', 'strict': False, 'use_enum_values': True, 'validate_assignment': True, 'validate_default': True}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

model_fields: ClassVar[dict[str, FieldInfo]] = {'hdf5_path': FieldInfo(annotation=Union[str, NoneType], required=False, default=None, description='The absolute path that this object is stored in an NWB file'), 'name': FieldInfo(annotation=Literal['indices'], required=False, default='indices', json_schema_extra={'linkml_meta': {'equals_string': 'indices', 'ifabsent': 'string(indices)'}}), 'object_id': FieldInfo(annotation=Union[str, NoneType], required=False, default=None, description='Unique UUID for each object')}

Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

This replaces Model.__fields__ from Pydantic V1.

class CSRMatrixIndptr(*, hdf5_path: str | None = None, object_id: str | None = None, name: Literal['indptr'] = 'indptr')

Bases: ConfiguredBaseModel

index pointer

Create a new model by parsing and validating input data from keyword arguments.

Raises [ValidationError][pydantic_core.ValidationError] if the input data cannot be validated to form a valid model.

self is explicitly positional-only to allow self as a field name.

linkml_meta: ClassVar[LinkMLMeta] = LinkMLMeta(root={'from_schema': 'hdmf-common.sparse'})

name: Literal['indptr']

model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}

A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

model_config: ClassVar[ConfigDict] = {'arbitrary_types_allowed': True, 'extra': 'forbid', 'strict': False, 'use_enum_values': True, 'validate_assignment': True, 'validate_default': True}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

model_fields: ClassVar[dict[str, FieldInfo]] = {'hdf5_path': FieldInfo(annotation=Union[str, NoneType], required=False, default=None, description='The absolute path that this object is stored in an NWB file'), 'name': FieldInfo(annotation=Literal['indptr'], required=False, default='indptr', json_schema_extra={'linkml_meta': {'equals_string': 'indptr', 'ifabsent': 'string(indptr)'}}), 'object_id': FieldInfo(annotation=Union[str, NoneType], required=False, default=None, description='Unique UUID for each object')}

Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

This replaces Model.__fields__ from Pydantic V1.

class CSRMatrixData(*, hdf5_path: str | None = None, object_id: str | None = None, name: Literal['data'] = 'data')

Bases: ConfiguredBaseModel

values in the matrix

Create a new model by parsing and validating input data from keyword arguments.

Raises [ValidationError][pydantic_core.ValidationError] if the input data cannot be validated to form a valid model.

self is explicitly positional-only to allow self as a field name.

linkml_meta: ClassVar[LinkMLMeta] = LinkMLMeta(root={'from_schema': 'hdmf-common.sparse'})

name: Literal['data']

model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}

A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

model_config: ClassVar[ConfigDict] = {'arbitrary_types_allowed': True, 'extra': 'forbid', 'strict': False, 'use_enum_values': True, 'validate_assignment': True, 'validate_default': True}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

model_fields: ClassVar[dict[str, FieldInfo]] = {'hdf5_path': FieldInfo(annotation=Union[str, NoneType], required=False, default=None, description='The absolute path that this object is stored in an NWB file'), 'name': FieldInfo(annotation=Literal['data'], required=False, default='data', json_schema_extra={'linkml_meta': {'equals_string': 'data', 'ifabsent': 'string(data)'}}), 'object_id': FieldInfo(annotation=Union[str, NoneType], required=False, default=None, description='Unique UUID for each object')}

Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

This replaces Model.__fields__ from Pydantic V1.