Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | Z A active_commit (GitRepo property) Adapter (class in nwb_linkml.adapters) (class in nwb_linkml.adapters.adapter) after_generate_class() (NWBPydanticGenerator method) after_generate_slot() (NWBPydanticGenerator method) AfterGenerateClass (class in nwb_linkml.generators.pydantic) AfterGenerateSlot (class in nwb_linkml.generators.pydantic) all_schemas() (NamespacesAdapter method), [1] allowed_precisions (in module nwb_linkml.maps.dtype) apply() (DatasetMap class method) (KeyMap method) (Map class method) (MapArraylike class method) (MapArrayLikeAttributes class method) (MapClassRange class method) (MapCompoundDtype class method) (MapListlike class method) (MapNVectorData class method) (MapNVectors class method) (MapScalar class method) (MapScalarAttributes class method) apply_postload() (in module nwb_linkml.maps.postload) array_representations (NWBPydanticGenerator attribute) ArrayAdapter (class in nwb_linkml.adapters) as_linkml() (BuildResult method), [1] ascii (FlatDtype attribute) ASTERISK (QuantityEnum attribute) Attribute (class in nwb_schema_language.datamodel.nwb_schema_pydantic) attributes (Dataset attribute) (Group attribute) author (Namespace attribute) B before_generate_slot() (NWBPydanticGenerator method) before_render_template() (NWBPydanticGenerator method) black (NWBPydanticGenerator attribute) bool (FlatDtype attribute) build() (Adapter method), [1] (ClassAdapter method), [1] (DatasetAdapter method), [1] (GroupAdapter method), [1] (NamespacesAdapter method), [1] (SchemaAdapter method), [1] (SchemaProvider method) build_attrs() (ClassAdapter method), [1] build_base() (ClassAdapter method), [1] build_containers() (GroupAdapter method), [1] build_datasets() (GroupAdapter method), [1] build_from_dicts() (SchemaProvider method) build_from_yaml() (SchemaProvider method) build_groups() (GroupAdapter method), [1] build_links() (GroupAdapter method), [1] build_name_slot() (ClassAdapter method), [1] build_self_slot() (ClassAdapter method), [1] (GroupAdapter method), [1] build_special_cases() (GroupAdapter method), [1] BuildResult (class in nwb_linkml.adapters) (class in nwb_linkml.adapters.adapter) C CAMEL_TO_SNAKE (in module nwb_linkml.maps.naming) camel_to_snake() (in module nwb_linkml.maps.naming) cast_from_string() (ClassAdapter class method), [1] check() (DatasetMap class method) (GitRepo method) (Map class method) (MapArraylike class method) (MapArrayLikeAttributes class method) (MapClassRange class method) (MapCompoundDtype class method) (MapListlike class method) (MapNVectorData class method) (MapNVectors class method) (MapScalar class method) (MapScalarAttributes class method) ClassAdapter (class in nwb_linkml.adapters) (class in nwb_linkml.adapters.classes) classes (BuildResult attribute), [1] cleanup() (GitRepo method) clone() (GitRepo method) cls (ClassAdapter attribute), [1] (DatasetAdapter attribute), [1] (GroupAdapter attribute), [1] commit (GitRepo property) complete_namespaces() (NamespacesAdapter method), [1] CompoundDtype (class in nwb_schema_language.datamodel.nwb_schema_pydantic) ConfiguredBaseModel (class in nwb_schema_language.datamodel.nwb_schema_pydantic) contact (Namespace attribute) created_classes (SchemaAdapter property), [1] D Dataset (class in nwb_schema_language.datamodel.nwb_schema_pydantic) DatasetAdapter (class in nwb_linkml.adapters) (class in nwb_linkml.adapters.dataset) DatasetMap (class in nwb_linkml.adapters.dataset) Datasets (class in nwb_schema_language.datamodel.nwb_schema_pydantic) datasets (Datasets attribute) (Group attribute) (SchemaAdapter attribute), [1] date (Namespace attribute) debug (Adapter property), [1] default_branch (GitRepo property) default_name (Dataset attribute) (Group attribute) default_value (Attribute attribute) (Dataset attribute) defaults() (in module nwb_linkml.adapters.adapter) detached_head (GitRepo property) dims (Attribute attribute) (Dataset attribute) doc (Attribute attribute) (CompoundDtype attribute) (Dataset attribute) (Group attribute) (Link attribute) (Namespace attribute) (Schema attribute) double (FlatDtype attribute) dtype (Attribute attribute) (CompoundDtype attribute) (Dataset attribute) (DtypeMixin attribute) DtypeMixin (class in nwb_schema_language.datamodel.nwb_schema_pydantic) E emit_metadata (NWBPydanticGenerator attribute) F filter_dependency_graph() (in module nwb_linkml.io.hdf5) find_references() (in module nwb_linkml.io.hdf5) find_type_source() (NamespacesAdapter method), [1] flat_to_linkml (in module nwb_linkml.maps.dtype) FlatDtype (class in nwb_schema_language.datamodel.nwb_schema_pydantic) float (FlatDtype attribute) float32 (FlatDtype attribute) float64 (FlatDtype attribute) from_yaml() (NamespacesAdapter class method), [1] full_name (Namespace attribute) G gen_classvars (NWBPydanticGenerator attribute) gen_slots (NWBPydanticGenerator attribute) get() (Adapter method), [1] (SchemaProvider method) get_attr_references() (in module nwb_linkml.io.hdf5) get_class() (SchemaProvider method) get_dataset_references() (in module nwb_linkml.io.hdf5) get_model_with_field() (Adapter method), [1] get_references() (in module nwb_linkml.io.hdf5) GitError GitRepo (class in nwb_linkml.providers.git) Group (class in nwb_schema_language.datamodel.nwb_schema_pydantic) GroupAdapter (class in nwb_linkml.adapters) (class in nwb_linkml.adapters.group) Groups (class in nwb_schema_language.datamodel.nwb_schema_pydantic) groups (Group attribute) (Groups attribute) (SchemaAdapter attribute), [1] H handle_container_group() (GroupAdapter method), [1] handle_container_slot() (GroupAdapter method), [1] handle_dtype() (in module nwb_linkml.maps.dtype) has_attrs() (in module nwb_linkml.adapters.adapter) HDF5IO (class in nwb_linkml.io.hdf5) hdf_dependency_graph() (in module nwb_linkml.io.hdf5) I import_namespaces (GitRepo property) imported (NamespacesAdapter attribute), [1] imports (NamespaceRepo attribute) (SchemaAdapter attribute), [1] inject_dynamictable() (AfterGenerateClass static method) inject_dynamictable_imports() (AfterGenerateClass static method) injected_fields (NWBPydanticGenerator attribute) inlined (NWBPydanticGenerator attribute) inlined() (in module nwb_linkml.maps.dtype) instances (KeyMap attribute) int (FlatDtype attribute) int16 (FlatDtype attribute) int32 (FlatDtype attribute) int64 (FlatDtype attribute) int8 (FlatDtype attribute) is_1d() (in module nwb_linkml.adapters.adapter) is_compound() (in module nwb_linkml.adapters.adapter) is_container() (in module nwb_linkml.adapters.adapter) isodatetime (FlatDtype attribute) K KeyMap (class in nwb_linkml.maps.postload) L Link (class in nwb_schema_language.datamodel.nwb_schema_pydantic) linkable (Dataset attribute) (Group attribute) Linked Data linkml_meta (Attribute attribute) (CompoundDtype attribute) (Dataset attribute) (Datasets attribute) (DtypeMixin attribute) (Group attribute) (Groups attribute) (Link attribute) (Namespace attribute) (Namespaces attribute) (ReferenceDtype attribute) (Schema attribute) linkml_reprs (in module nwb_linkml.maps.dtype) LinkMLMeta (class in nwb_schema_language.datamodel.nwb_schema_pydantic) links (Group attribute) load_namespace_adapter() (in module nwb_linkml.io.schema) load_namespaces() (in module nwb_linkml.io.schema) load_nwb_core() (in module nwb_linkml.io.schema) load_schema_file() (in module nwb_linkml.io.schema) logger (Adapter property), [1] long (FlatDtype attribute) M make() (ArrayAdapter method) make_array_anyofs() (AfterGenerateSlot static method) make_expression() (ArrayAdapter method) make_named_class_range() (AfterGenerateSlot static method) make_provider() (HDF5IO method) make_slot() (ArrayAdapter method) Map (class in nwb_linkml.adapters.adapter) MapArraylike (class in nwb_linkml.adapters.dataset) MapArrayLikeAttributes (class in nwb_linkml.adapters.dataset) MapClassRange (class in nwb_linkml.adapters.dataset) MapCompoundDtype (class in nwb_linkml.adapters.dataset) MapListlike (class in nwb_linkml.adapters.dataset) MapNVectorData (class in nwb_linkml.adapters.dataset) MapNVectors (class in nwb_linkml.adapters.dataset) MapScalar (class in nwb_linkml.adapters.dataset) MapScalarAttributes (class in nwb_linkml.adapters.dataset) match() (DatasetAdapter method), [1] metadata_mode (NWBPydanticGenerator attribute) model_computed_fields (Adapter attribute), [1] (Attribute attribute) (ClassAdapter attribute), [1] (CompoundDtype attribute) (ConfiguredBaseModel attribute) (Dataset attribute) (DatasetAdapter attribute), [1] (Datasets attribute) (DtypeMixin attribute) (Group attribute) (GroupAdapter attribute), [1] (Groups attribute) (Link attribute) (LinkMLMeta attribute) (Namespace attribute) (NamespaceRepo attribute) (Namespaces attribute) (NamespacesAdapter attribute), [1] (ParentizeMixin attribute) (ReferenceDtype attribute) (Schema attribute) (SchemaAdapter attribute), [1] model_config (Adapter attribute), [1] (Attribute attribute) (ClassAdapter attribute), [1] (CompoundDtype attribute) (ConfiguredBaseModel attribute) (Dataset attribute) (DatasetAdapter attribute), [1] (Datasets attribute) (DtypeMixin attribute) (Group attribute) (GroupAdapter attribute), [1] (Groups attribute) (Link attribute) (LinkMLMeta attribute) (Namespace attribute) (NamespaceRepo attribute) (Namespaces attribute) (NamespacesAdapter attribute), [1] (ParentizeMixin attribute) (ReferenceDtype attribute) (Schema attribute) (SchemaAdapter attribute), [1] model_fields (Adapter attribute), [1] (Attribute attribute) (ClassAdapter attribute), [1] (CompoundDtype attribute) (ConfiguredBaseModel attribute) (Dataset attribute) (DatasetAdapter attribute), [1] (Datasets attribute) (DtypeMixin attribute) (Group attribute) (GroupAdapter attribute), [1] (Groups attribute) (Link attribute) (LinkMLMeta attribute) (Namespace attribute) (NamespaceRepo attribute) (Namespaces attribute) (NamespacesAdapter attribute), [1] (ParentizeMixin attribute) (ReferenceDtype attribute) (Schema attribute) (SchemaAdapter attribute), [1] model_post_init() (Adapter method), [1] (ClassAdapter method), [1] (DatasetAdapter method), [1] (GroupAdapter method), [1] (NamespacesAdapter method), [1] (SchemaAdapter method), [1] module nwb_linkml.adapters nwb_linkml.adapters.adapter nwb_linkml.adapters.classes nwb_linkml.adapters.dataset nwb_linkml.adapters.group nwb_linkml.adapters.namespaces nwb_linkml.adapters.schema nwb_linkml.generators.pydantic nwb_linkml.io.hdf5 nwb_linkml.io.schema nwb_linkml.maps.dtype nwb_linkml.maps.naming nwb_linkml.maps.postload nwb_linkml.maps.quantity nwb_linkml.providers.git nwb_linkml.providers.schema nwb_schema_language.datamodel.nwb_schema_pydantic module_case() (in module nwb_linkml.maps.naming) N name (Attribute attribute) (CompoundDtype attribute) (Dataset attribute) (Group attribute) (Link attribute) (Namespace attribute) (NamespaceRepo attribute) (SchemaAdapter property), [1] Namespace (class in nwb_schema_language.datamodel.nwb_schema_pydantic) namespace (Schema attribute) (SchemaAdapter attribute), [1] (SCOPE_TYPES attribute) namespace_file (GitRepo property) namespace_schemas() (NamespacesAdapter method), [1] NamespaceRepo (class in nwb_linkml.providers.git) Namespaces (class in nwb_schema_language.datamodel.nwb_schema_pydantic) namespaces (Namespaces attribute) (NamespacesAdapter attribute), [1] NamespacesAdapter (class in nwb_linkml.adapters) (class in nwb_linkml.adapters.namespaces) needed_imports (NamespacesAdapter property), [1] (SchemaAdapter property), [1] NEEDS_NAME (MapArrayLikeAttributes attribute) neurodata_type_def (Dataset attribute) (Group attribute) neurodata_type_inc (Dataset attribute) (Group attribute) neurodata_types (Schema attribute) numeric (FlatDtype attribute) NWB Schema Language nwb_linkml.adapters module nwb_linkml.adapters.adapter module nwb_linkml.adapters.classes module nwb_linkml.adapters.dataset module nwb_linkml.adapters.group module nwb_linkml.adapters.namespaces module nwb_linkml.adapters.schema module nwb_linkml.generators.pydantic module nwb_linkml.io.hdf5 module nwb_linkml.io.schema module nwb_linkml.maps.dtype module nwb_linkml.maps.naming module nwb_linkml.maps.postload module nwb_linkml.maps.quantity module nwb_linkml.providers.git module nwb_linkml.providers.schema module nwb_schema_language.datamodel.nwb_schema_pydantic module NWBPydanticGenerator (class in nwb_linkml.generators.pydantic) O object (ReftypeOptions attribute) one_or_many (QuantityEnum attribute) P parent (Attribute attribute) (ClassAdapter attribute), [1] (Dataset attribute) (DatasetAdapter attribute) (Group attribute) (GroupAdapter attribute) parentize() (ParentizeMixin method) ParentizeMixin (class in nwb_schema_language.datamodel.nwb_schema_pydantic) path (NamespaceRepo attribute) (SchemaAdapter attribute), [1] (SchemaProvider property) phase (KeyMap attribute) PHASES (class in nwb_linkml.maps.postload) pivot_dims() (ArrayAdapter method) PLUS_SIGN (QuantityEnum attribute) postload (PHASES attribute) provide_from_git() (NamespaceRepo method) Q quantity (Dataset attribute) (Group attribute) (Link attribute) QUANTITY_MAP (in module nwb_linkml.maps.quantity) QuantityEnum (class in nwb_schema_language.datamodel.nwb_schema_pydantic) QUESTION_MARK (QuantityEnum attribute) R read() (HDF5IO method) read_specs_as_dicts() (in module nwb_linkml.io.hdf5) ref (ReftypeOptions attribute) reference (ReftypeOptions attribute) ReferenceDtype (class in nwb_schema_language.datamodel.nwb_schema_pydantic) reftype (ReferenceDtype attribute) ReftypeOptions (class in nwb_schema_language.datamodel.nwb_schema_pydantic) region (ReftypeOptions attribute) relative_path() (in module nwb_linkml.maps.naming) remote (GitRepo property) render() (NWBPydanticGenerator method) repository (NamespaceRepo attribute) required (Attribute attribute) resolve_hardlink() (in module nwb_linkml.io.hdf5) roll_down_nwb_class() (in module nwb_linkml.adapters.namespaces) root (LinkMLMeta attribute) S Schema (class in nwb_schema_language.datamodel.nwb_schema_pydantic) schema language schema_ (Namespace attribute) schema_map (NWBPydanticGenerator attribute) schema_namespace() (NamespacesAdapter method), [1] SchemaAdapter (class in nwb_linkml.adapters) (class in nwb_linkml.adapters.schema) SchemaProvider (class in nwb_linkml.providers.schema) schemas (BuildResult attribute), [1] (NamespacesAdapter attribute), [1] scope (KeyMap attribute) scope_type (KeyMap attribute) SCOPE_TYPES (class in nwb_linkml.maps.postload) shape (Attribute attribute) (Dataset attribute) short (FlatDtype attribute) skip_meta (NWBPydanticGenerator attribute) skip_meta() (AfterGenerateSlot static method) SKIP_PATTERN (in module nwb_linkml.io.hdf5) slots (BuildResult attribute), [1] snake_case() (in module nwb_linkml.maps.naming) source (KeyMap attribute) (Schema attribute) split (NWBPydanticGenerator attribute) T tag (GitRepo property) target (KeyMap attribute) target_type (Link attribute) (ReferenceDtype attribute) temp_directory (GitRepo property) text (FlatDtype attribute) title (Schema attribute) to_yaml() (NamespacesAdapter method), [1] transform (KeyMap attribute) truncate_file() (in module nwb_linkml.io.hdf5) TYPE (ClassAdapter attribute), [1] (DatasetAdapter attribute), [1] (GroupAdapter attribute), [1] types (BuildResult attribute), [1] U uint (FlatDtype attribute) uint16 (FlatDtype attribute) uint32 (FlatDtype attribute) uint64 (FlatDtype attribute) uint8 (FlatDtype attribute) utf (FlatDtype attribute) utf8 (FlatDtype attribute) utf_8 (FlatDtype attribute) V value (Attribute attribute) (Dataset attribute) version (Namespace attribute) (SchemaAdapter attribute), [1] version_module_case() (in module nwb_linkml.maps.naming) versions (NamespaceRepo attribute) (NamespacesAdapter property), [1] W walk() (Adapter method), [1] walk_field_values() (Adapter method), [1] walk_fields() (Adapter method), [1] walk_types() (Adapter method), [1] wrap_dynamictable_columns() (AfterGenerateClass static method) wrap_preserving_optional() (in module nwb_linkml.generators.pydantic) write() (HDF5IO method) Z zero_or_many (QuantityEnum attribute) zero_or_one (QuantityEnum attribute)