Index

_

__class_vars__ (BaseModel attribute), [1] __private_attributes__ (BaseModel attribute), [1] __pydantic_complete__ (BaseModel attribute), [1] __pydantic_core_schema__ (BaseModel attribute), [1] __pydantic_custom_init__ (BaseModel attribute), [1] __pydantic_decorators__ (BaseModel attribute), [1] __pydantic_extra__ (BaseModel attribute), [1] __pydantic_fields_set__ (BaseModel attribute), [1]

__pydantic_generic_metadata__ (BaseModel attribute), [1] __pydantic_parent_namespace__ (BaseModel attribute), [1] __pydantic_post_init__ (BaseModel attribute), [1] __pydantic_private__ (BaseModel attribute), [1] __pydantic_root_model__ (BaseModel attribute), [1] __pydantic_serializer__ (BaseModel attribute), [1] __pydantic_validator__ (BaseModel attribute), [1] __signature__ (BaseModel attribute), [1]

A

acquisition (NWBFile attribute), [1] active_commit (GitRepo property) age (Subject attribute), [1] allow_repo (Provider attribute) allowed_precisions (in module nwb_linkml.maps.dtype) analysis (NWBFile attribute), [1] Any (class in nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (class in nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) apply() (DatasetMap class method) (KeyMap method) (Map1DVector class method) (MapArraylike class method) (MapArrayLikeAttributes class method) (MapListlike class method) (MapNVectors class method) (MapScalar class method) (MapScalarAttributes class method) apply_postload() (in module nwb_linkml.maps.postload) array (AbstractFeatureSeriesData attribute) (ClusterWaveformsWaveformMean attribute) (ClusterWaveformsWaveformSd attribute) (DecompositionSeriesBandsBandLimits attribute) (DecompositionSeriesData attribute) (DecompositionSeriesSourceChannels attribute) (DynamicTableRegion attribute), [1], [2], [3] (ElectricalSeriesData attribute) (ElectricalSeriesElectrodes attribute) (ElementIdentifiers attribute), [1], [2], [3], [4], [5] (EnumData attribute), [1] (ExperimentalConditionsTableRepetitions attribute) (ExperimentalConditionsTableRepetitionsIndex attribute) (FeatureExtractionElectrodes attribute) (FeatureExtractionFeatures attribute) (GrayscaleImage attribute), [1] (Image attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (ImageReferences attribute), [1], [2] (ImageSeriesData attribute) (ImagesOrderOfImages attribute), [1] (ImagingRetinotopyAxis1PhaseMap attribute) (ImagingRetinotopyAxis1PowerMap attribute) (ImagingRetinotopyAxis2PhaseMap attribute) (ImagingRetinotopyAxis2PowerMap attribute) (ImagingRetinotopyFocalDepthImage attribute) (ImagingRetinotopySignMap attribute) (ImagingRetinotopyVasculatureImage attribute) (IntracellularResponsesTableResponse attribute) (IntracellularStimuliTableStimulus attribute) (OpticalSeriesData attribute) (OpticalSeriesFieldOfView attribute) (PlaneSegmentationImageMask attribute) (PlaneSegmentationPixelMaskIndex attribute) (PlaneSegmentationVoxelMaskIndex attribute) (RepetitionsTableSequentialRecordings attribute) (RepetitionsTableSequentialRecordingsIndex attribute) (RGBAImage attribute), [1] (RGBImage attribute), [1] (RoiResponseSeriesData attribute) (RoiResponseSeriesRois attribute) (SequentialRecordingsTableSimultaneousRecordings attribute) (SequentialRecordingsTableSimultaneousRecordingsIndex attribute) (SimultaneousRecordingsTableRecordings attribute) (SimultaneousRecordingsTableRecordingsIndex attribute) (SpatialSeriesData attribute) (SpikeEventSeriesData attribute) (SweepTableSeriesIndex attribute) (TimeIntervalsTagsIndex attribute), [1], [2], [3], [4], [5] (TimeIntervalsTimeseries attribute) (TimeIntervalsTimeseriesIndex attribute), [1], [2], [3], [4], [5] (TimeSeriesData attribute), [1], [2], [3], [4], [5], [6], [7], [8] (TimeSeriesReferenceVectorData attribute), [1], [2], [3] (TwoPhotonSeriesFieldOfView attribute) (UnitsElectrodes attribute) (UnitsElectrodesIndex attribute) (UnitsObsIntervals attribute) (UnitsObsIntervalsIndex attribute) (UnitsSpikeTimes attribute) (UnitsSpikeTimesIndex attribute) (UnitsWaveformMean attribute) (UnitsWaveforms attribute) (UnitsWaveformSd attribute) (UnitsWaveformsIndex attribute) (UnitsWaveformsIndexIndex attribute) (VectorData attribute), [1], [2], [3] (VectorIndex attribute), [1], [2], [3]

ascii (FlatDtype attribute) ASTERISK (QuantityEnum attribute) astimezone() (datetime method), [1] attributes (Dataset attribute) (Group attribute) author (Namespace attribute) available_versions (Provider property) axis_1_phase_map (ImagingRetinotopy attribute), [1] axis_1_power_map (ImagingRetinotopy attribute), [1] axis_2_phase_map (ImagingRetinotopy attribute), [1] axis_2_power_map (ImagingRetinotopy attribute), [1] axis_descriptions (ImagingRetinotopy attribute), [1]

B

band_limits (DecompositionSeriesBands attribute) band_mean (DecompositionSeriesBands attribute) band_name (DecompositionSeriesBands attribute) band_stdev (DecompositionSeriesBands attribute) bands (DecompositionSeries attribute), [1] bias_current (CurrentClampSeries attribute), [1] (IZeroClampSeries attribute), [1] binning (OnePhotonSeries attribute), [1] bits_per_pixel (ImagingRetinotopyFocalDepthImage attribute) (ImagingRetinotopyVasculatureImage attribute) bool (FlatDtype attribute) Bool (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) bridge_balance (CurrentClampSeries attribute), [1] (IZeroClampSeries attribute), [1] build() (Adapter method) (ClassAdapter method) (DatasetAdapter method) (GroupAdapter method) (LinkMLProvider method) (NamespacesAdapter method) (Provider method) (PydanticProvider method) (SchemaAdapter method) (SchemaProvider method)

build_attrs() (ClassAdapter method) build_base() (ClassAdapter method) build_from_dicts() (LinkMLProvider method) (SchemaProvider method) build_from_yaml() (LinkMLProvider method) (SchemaProvider method) build_name_slot() (ClassAdapter method) build_self_slot() (ClassAdapter method) build_subclasses() (GroupAdapter method) BuildResult (class in nwb_linkml.adapters.adapter)

C

cache_dir (Provider attribute) CAMEL_TO_SNAKE (in module nwb_linkml.maps.naming) camel_to_snake() (in module nwb_linkml.maps.naming) capacitance_compensation (CurrentClampSeries attribute), [1] (IZeroClampSeries attribute), [1] capacitance_fast (VoltageClampSeries attribute), [1] capacitance_slow (VoltageClampSeries attribute), [1] cell_id (IntracellularElectrode attribute), [1] channel_conversion (ElectricalSeries attribute), [1] (SpikeEventSeries attribute), [1] check() (DatasetMap class method) (GitRepo method) (Map1DVector class method) (MapArraylike class method) (MapArrayLikeAttributes class method) (MapListlike class method) (MapNVectors class method) (MapScalar class method) (MapScalarAttributes class method) children (AlignedDynamicTable attribute), [1], [2] (BehavioralEpochs attribute), [1] (BehavioralEvents attribute), [1] (BehavioralTimeSeries attribute), [1] (CompassDirection attribute), [1] (DfOverF attribute), [1] (EventWaveform attribute), [1] (EyeTracking attribute), [1] (FilteredEphys attribute), [1] (Fluorescence attribute), [1] (ImageSegmentation attribute), [1] (ImagingPlane attribute), [1] (IntracellularRecordingsTable attribute), [1] (LFP attribute), [1] (MotionCorrection attribute), [1] (Position attribute), [1] (ProcessingModule attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (PupilTracking attribute), [1] (SimpleMultiContainer attribute), [1], [2] classes (BuildResult attribute) cleanup() (GitRepo method) clone() (GitRepo method) cls (ClassAdapter attribute) (DatasetAdapter attribute) (GroupAdapter attribute) colnames (AlignedDynamicTable attribute), [1], [2] (DecompositionSeriesBands attribute) (DynamicTable attribute), [1], [2], [3], [4], [5] (ExperimentalConditionsTable attribute), [1] (IntracellularElectrodesTable attribute), [1] (IntracellularRecordingsTable attribute), [1] (IntracellularResponsesTable attribute), [1] (IntracellularStimuliTable attribute), [1] (NWBFileGeneralExtracellularEphysElectrodes attribute) (PlaneSegmentation attribute), [1] (RepetitionsTable attribute), [1] (SequentialRecordingsTable attribute), [1] (SimultaneousRecordingsTable attribute), [1] (SweepTable attribute), [1] (TimeIntervals attribute), [1], [2], [3], [4], [5], [6], [7], [8] (Units attribute), [1] combine() (datetime method), [1] comments (AbstractFeatureSeries attribute), [1] (AnnotationSeries attribute), [1] (CurrentClampSeries attribute), [1] (CurrentClampStimulusSeries attribute), [1] (DecompositionSeries attribute), [1] (ElectricalSeries attribute), [1] (ImageMaskSeries attribute), [1] (ImageSeries attribute), [1] (IndexSeries attribute), [1] (IntervalSeries attribute), [1] (IZeroClampSeries attribute), [1] (OnePhotonSeries attribute), [1] (OpticalSeries attribute), [1] (OptogeneticSeries attribute), [1] (PatchClampSeries attribute), [1] (RoiResponseSeries attribute), [1] (SpatialSeries attribute), [1] (SpikeEventSeries attribute), [1] (TimeSeries attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (TwoPhotonSeries attribute), [1] (VoltageClampSeries attribute), [1] (VoltageClampStimulusSeries attribute), [1]

commit (GitRepo property) compile_module() (NWBPydanticGenerator method) compile_python() (in module nwb_linkml.generators.pydantic) config (Provider attribute) construct() (BaseModel class method), [1] contact (Namespace attribute) continuity (TimeSeriesData attribute), [1], [2], [3] control (AbstractFeatureSeries attribute), [1] (AnnotationSeries attribute), [1] (CurrentClampSeries attribute), [1] (CurrentClampStimulusSeries attribute), [1] (DecompositionSeries attribute), [1] (ElectricalSeries attribute), [1] (ImageMaskSeries attribute), [1] (ImageSeries attribute), [1] (IndexSeries attribute), [1] (IntervalSeries attribute), [1] (IZeroClampSeries attribute), [1] (OnePhotonSeries attribute), [1] (OpticalSeries attribute), [1] (OptogeneticSeries attribute), [1] (PatchClampSeries attribute), [1] (RoiResponseSeries attribute), [1] (SpatialSeries attribute), [1] (SpikeEventSeries attribute), [1] (TimeSeries attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (TwoPhotonSeries attribute), [1] (VoltageClampSeries attribute), [1] (VoltageClampStimulusSeries attribute), [1] control_description (AbstractFeatureSeries attribute), [1] (AnnotationSeries attribute), [1] (CurrentClampSeries attribute), [1] (CurrentClampStimulusSeries attribute), [1] (DecompositionSeries attribute), [1] (ElectricalSeries attribute), [1] (ImageMaskSeries attribute), [1] (ImageSeries attribute), [1] (IndexSeries attribute), [1] (IntervalSeries attribute), [1] (IZeroClampSeries attribute), [1] (OnePhotonSeries attribute), [1] (OpticalSeries attribute), [1] (OptogeneticSeries attribute), [1] (PatchClampSeries attribute), [1] (RoiResponseSeries attribute), [1] (SpatialSeries attribute), [1] (SpikeEventSeries attribute), [1] (TimeSeries attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (TwoPhotonSeries attribute), [1] (VoltageClampSeries attribute), [1] (VoltageClampStimulusSeries attribute), [1] conversion (TimeSeriesData attribute), [1], [2], [3], [4], [5], [6], [7], [8] copy() (BaseModel method), [1] corrected (CorrectedImageStack attribute), [1] created_classes (SchemaAdapter property) ctime() (date method), [1] (datetime method), [1]

D

data (AbstractFeatureSeries attribute), [1] (AnnotationSeries attribute), [1] (CSRMatrix attribute), [1], [2], [3], [4], [5] (CurrentClampSeries attribute), [1] (CurrentClampStimulusSeries attribute), [1] (DecompositionSeries attribute), [1] (ElectricalSeries attribute), [1] (ImageMaskSeries attribute), [1] (ImageSeries attribute), [1] (IndexSeries attribute), [1] (IntervalSeries attribute), [1] (IZeroClampSeries attribute), [1] (OnePhotonSeries attribute), [1] (OpticalSeries attribute), [1] (OptogeneticSeries attribute), [1] (PatchClampSeries attribute), [1] (RoiResponseSeries attribute), [1] (SpatialSeries attribute), [1] (SpikeEventSeries attribute), [1] (TimeSeries attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (TwoPhotonSeries attribute), [1] (VoltageClampSeries attribute), [1] (VoltageClampStimulusSeries attribute), [1] data_collection (NWBFileGeneral attribute) DatasetMap (class in nwb_linkml.adapters.dataset) datasets (Datasets attribute) (Group attribute) (SchemaAdapter attribute) date (class in nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (class in nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) (Namespace attribute) date() (datetime method), [1] date_of_birth (Subject attribute), [1] datetime (class in nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (class in nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) Datetime64 (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) day (date attribute), [1] default_branch (GitRepo property) default_name (Dataset attribute) (Group attribute) default_template() (in module nwb_linkml.generators.pydantic) default_value (Attribute attribute) (Dataset attribute) description (AbstractFeatureSeries attribute), [1] (AlignedDynamicTable attribute), [1], [2] (AnnotationSeries attribute), [1] (Clustering attribute), [1] (CurrentClampSeries attribute), [1] (CurrentClampStimulusSeries attribute), [1] (DecompositionSeries attribute), [1] (DecompositionSeriesBands attribute) (DecompositionSeriesBandsBandLimits attribute) (DecompositionSeriesSourceChannels attribute) (Device attribute), [1] (DynamicTable attribute), [1], [2], [3], [4], [5] (DynamicTableRegion attribute), [1], [2], [3], [4], [5] (ElectricalSeries attribute), [1] (ElectricalSeriesElectrodes attribute) (ElectrodeGroup attribute), [1] (EnumData attribute), [1] (ExperimentalConditionsTable attribute), [1] (ExperimentalConditionsTableRepetitions attribute) (ExperimentalConditionsTableRepetitionsIndex attribute) (FeatureExtraction attribute), [1] (FeatureExtractionElectrodes attribute) (GrayscaleImage attribute), [1] (Image attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (ImageMaskSeries attribute), [1] (Images attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (ImageSeries attribute), [1] (IndexSeries attribute), [1] (IntervalSeries attribute), [1] (IntracellularElectrode attribute), [1] (IntracellularElectrodesTable attribute), [1] (IntracellularRecordingsTable attribute), [1] (IntracellularResponsesTable attribute), [1] (IntracellularResponsesTableResponse attribute) (IntracellularStimuliTable attribute), [1] (IntracellularStimuliTableStimulus attribute) (IZeroClampSeries attribute), [1] (NWBFileGeneralExtracellularEphysElectrodes attribute) (OnePhotonSeries attribute), [1] (OpticalChannel attribute), [1] (OpticalSeries attribute), [1] (OptogeneticSeries attribute), [1] (OptogeneticStimulusSite attribute), [1] (PatchClampSeries attribute), [1] (PlaneSegmentation attribute), [1] (PlaneSegmentationImageMask attribute) (PlaneSegmentationPixelMaskIndex attribute) (PlaneSegmentationVoxelMaskIndex attribute) (RepetitionsTable attribute), [1] (RepetitionsTableSequentialRecordings attribute) (RepetitionsTableSequentialRecordingsIndex attribute) (RGBAImage attribute), [1] (RGBImage attribute), [1] (RoiResponseSeries attribute), [1] (RoiResponseSeriesRois attribute) (SequentialRecordingsTable attribute), [1] (SequentialRecordingsTableSimultaneousRecordings attribute) (SequentialRecordingsTableSimultaneousRecordingsIndex attribute) (SimultaneousRecordingsTable attribute), [1] (SimultaneousRecordingsTableRecordings attribute) (SimultaneousRecordingsTableRecordingsIndex attribute) (SpatialSeries attribute), [1] (SpikeEventSeries attribute), [1] (Subject attribute), [1] (SweepTable attribute), [1] (SweepTableSeriesIndex attribute) (TimeIntervals attribute), [1], [2], [3], [4], [5], [6], [7], [8] (TimeIntervalsTagsIndex attribute), [1], [2] (TimeIntervalsTimeseries attribute) (TimeIntervalsTimeseriesIndex attribute), [1], [2] (TimeSeries attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (TimeSeriesReferenceVectorData attribute), [1], [2], [3] (TwoPhotonSeries attribute), [1] (Units attribute), [1] (UnitsElectrodes attribute) (UnitsElectrodesIndex attribute) (UnitsObsIntervals attribute) (UnitsObsIntervalsIndex attribute) (UnitsSpikeTimes attribute) (UnitsSpikeTimesIndex attribute) (UnitsWaveformMean attribute) (UnitsWaveforms attribute) (UnitsWaveformSd attribute) (UnitsWaveformsIndex attribute) (UnitsWaveformsIndexIndex attribute) (VectorData attribute), [1], [2], [3], [4], [5] (VectorIndex attribute), [1], [2] (VoltageClampSeries attribute), [1] (VoltageClampStimulusSeries attribute), [1]

detached_head (GitRepo property) detection_method (EventDetection attribute), [1] devices (NWBFileGeneral attribute) dict() (BaseModel method), [1] dimension (ImageMaskSeries attribute), [1] (ImageSeries attribute), [1] (ImagingRetinotopyAxis1PhaseMap attribute) (ImagingRetinotopyAxis1PowerMap attribute) (ImagingRetinotopyAxis2PhaseMap attribute) (ImagingRetinotopyAxis2PowerMap attribute) (ImagingRetinotopyFocalDepthImage attribute) (ImagingRetinotopySignMap attribute) (ImagingRetinotopyVasculatureImage attribute) (OnePhotonSeries attribute), [1] (OpticalSeries attribute), [1] (TwoPhotonSeries attribute), [1] dims (Attribute attribute) (Dataset attribute) distance (OpticalSeries attribute), [1] doc (Attribute attribute) (CompoundDtype attribute) (Dataset attribute) (Group attribute) (Link attribute) (Namespace attribute) (Schema attribute) double (FlatDtype attribute) Double (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) dst() (datetime method), [1] dtype (Attribute attribute) (CompoundDtype attribute) (Dataset attribute) (DtypeMixin attribute)

E

EctopicModelFinder (class in nwb_linkml.providers.schema) electrode (IntracellularElectrodesTable attribute), [1] electrode_group (NWBFileGeneralExtracellularEphys attribute) (Units attribute), [1] electrodes (ElectricalSeries attribute), [1] (FeatureExtraction attribute), [1] (IntracellularRecordingsTable attribute), [1] (NWBFileGeneralExtracellularEphys attribute) (SpikeEventSeries attribute), [1] (Units attribute), [1] electrodes_index (Units attribute), [1] elements (EnumData attribute), [1] emission_lambda (OpticalChannel attribute), [1] entities (ExternalResources attribute), [1]

Enum (class in nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (class in nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) epochs (NWBFileIntervals attribute) excitation_lambda (OptogeneticStimulusSite attribute), [1] experiment_description (NWBFileGeneral attribute) experimental_conditions (NWBFileGeneralIntracellularEphys attribute) experimenter (NWBFileGeneral attribute) exposure_time (OnePhotonSeries attribute), [1] external_file (ImageMaskSeries attribute), [1] (ImageSeries attribute), [1] (OnePhotonSeries attribute), [1] (OpticalSeries attribute), [1] (TwoPhotonSeries attribute), [1] extracellular_ephys (NWBFileGeneral attribute)

F

feature_units (AbstractFeatureSeries attribute), [1] features (AbstractFeatureSeries attribute), [1] (FeatureExtraction attribute), [1] Field() (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) field_of_view (ImagingRetinotopyAxis1PhaseMap attribute) (ImagingRetinotopyAxis1PowerMap attribute) (ImagingRetinotopyAxis2PhaseMap attribute) (ImagingRetinotopyAxis2PowerMap attribute) (ImagingRetinotopyFocalDepthImage attribute) (ImagingRetinotopySignMap attribute) (ImagingRetinotopyVasculatureImage attribute) (OpticalSeries attribute), [1] (TwoPhotonSeries attribute), [1] file_create_date (NWBFile attribute), [1] file_name (NWBFileGeneralSourceScript attribute) filtering (ElectricalSeries attribute), [1] (IntracellularElectrode attribute), [1] (NWBFileGeneralExtracellularEphysElectrodes attribute) (NWBFileGeneralIntracellularEphys attribute) (SpikeEventSeries attribute), [1] find_references() (in module nwb_linkml.io.hdf5) find_spec() (EctopicModelFinder method) find_type_source() (NamespacesAdapter method) flat_to_linkml (in module nwb_linkml.maps.dtype) FlatDtype (class in nwb_schema_language.datamodel.nwb_schema_pydantic) float (FlatDtype attribute)

Float (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) float32 (FlatDtype attribute) Float32 (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) float64 (FlatDtype attribute) Float64 (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) focal_depth (ImagingRetinotopyFocalDepthImage attribute) focal_depth_image (ImagingRetinotopy attribute), [1] fold (datetime attribute), [1] format (ImageMaskSeries attribute), [1] (ImageSeries attribute), [1] (ImagingRetinotopyFocalDepthImage attribute) (ImagingRetinotopyVasculatureImage attribute) (OnePhotonSeries attribute), [1] (OpticalSeries attribute), [1] (TwoPhotonSeries attribute), [1] from_orm() (BaseModel class method), [1] from_yaml() (NamespacesAdapter class method) fromisocalendar() (date method), [1] fromisoformat() (date method), [1] (datetime method), [1] fromordinal() (date method), [1] fromtimestamp() (date method), [1] (datetime method), [1] full_name (Namespace attribute)

G

gain (CurrentClampSeries attribute), [1] (CurrentClampStimulusSeries attribute), [1] (IZeroClampSeries attribute), [1] (PatchClampSeries attribute), [1] (VoltageClampSeries attribute), [1] (VoltageClampStimulusSeries attribute), [1] general (NWBFile attribute), [1] genotype (Subject attribute), [1] get() (LinkMLProvider method) (Provider method) (PydanticProvider method) (SchemaProvider method)

get_class() (PydanticProvider method) (SchemaProvider method) get_class_isa_plus_mixins() (NWBPydanticGenerator method) get_class_slot_range() (NWBPydanticGenerator method) get_predefined_slot_value() (NWBPydanticGenerator method) GitError GitRepo (class in nwb_linkml.providers.git) group (NWBFileGeneralExtracellularEphysElectrodes attribute) group_name (NWBFileGeneralExtracellularEphysElectrodes attribute) groups (Group attribute) (Groups attribute) (SchemaAdapter attribute)

H

handle_container_group() (GroupAdapter method) handle_container_slot() (GroupAdapter method) handle_dtype() (ClassAdapter class method) has_attrs() (in module nwb_linkml.adapters.dataset) hdf5_path (AbstractFeatureSeries attribute) (AlignedDynamicTable attribute), [1] (AnnotationSeries attribute) (BehavioralEpochs attribute) (BehavioralEvents attribute) (BehavioralTimeSeries attribute) (Clustering attribute) (ClusterWaveforms attribute) (CompassDirection attribute) (ConfiguredBaseModel attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25], [26], [27], [28], [29], [30], [31], [32], [33], [34], [35], [36], [37], [38], [39], [40], [41], [42], [43], [44], [45], [46], [47], [48], [49], [50], [51], [52], [53], [54], [55], [56], [57], [58], [59] (Container attribute), [1] (CorrectedImageStack attribute) (CSRMatrix attribute), [1] (CurrentClampSeries attribute) (CurrentClampStimulusSeries attribute) (Data attribute), [1] (DecompositionSeries attribute) (Device attribute) (DfOverF attribute) (DynamicTable attribute), [1] (DynamicTableRegion attribute), [1] (ElectricalSeries attribute) (ElectrodeGroup attribute) (ElementIdentifiers attribute), [1] (EnumData attribute) (EventDetection attribute) (EventWaveform attribute) (ExperimentalConditionsTable attribute) (ExternalResources attribute) (EyeTracking attribute) (FeatureExtraction attribute) (FilteredEphys attribute) (Fluorescence attribute) (GrayscaleImage attribute) (Image attribute) (ImageMaskSeries attribute) (ImageReferences attribute) (Images attribute) (ImageSegmentation attribute) (ImageSeries attribute) (ImagingPlane attribute) (ImagingRetinotopy attribute) (IndexSeries attribute) (IntervalSeries attribute) (IntracellularElectrode attribute) (IntracellularElectrodesTable attribute) (IntracellularRecordingsTable attribute) (IntracellularResponsesTable attribute) (IntracellularStimuliTable attribute) (IZeroClampSeries attribute) (LabMetaData attribute) (LFP attribute) (MotionCorrection attribute) (NWBContainer attribute) (NWBData attribute) (NWBDataInterface attribute) (NWBFile attribute) (OnePhotonSeries attribute) (OpticalChannel attribute) (OpticalSeries attribute) (OptogeneticSeries attribute) (OptogeneticStimulusSite attribute) (PatchClampSeries attribute) (PlaneSegmentation attribute) (Position attribute) (ProcessingModule attribute) (PupilTracking attribute) (RepetitionsTable attribute) (RGBAImage attribute) (RGBImage attribute) (RoiResponseSeries attribute) (ScratchData attribute) (SequentialRecordingsTable attribute) (SimpleMultiContainer attribute), [1] (SimultaneousRecordingsTable attribute) (SpatialSeries attribute) (SpikeEventSeries attribute) (Subject attribute) (SweepTable attribute) (TimeIntervals attribute) (TimeSeries attribute) (TimeSeriesReferenceVectorData attribute) (TwoPhotonSeries attribute) (Units attribute) (VectorData attribute), [1] (VectorIndex attribute), [1] (VoltageClampSeries attribute) (VoltageClampStimulusSeries attribute)

HDF5IO (class in nwb_linkml.io.hdf5) hour (datetime attribute), [1]

I

id (AlignedDynamicTable attribute), [1], [2] (DecompositionSeriesBands attribute) (DynamicTable attribute), [1], [2], [3], [4], [5] (ExperimentalConditionsTable attribute), [1] (IntracellularElectrodesTable attribute), [1] (IntracellularRecordingsTable attribute), [1] (IntracellularResponsesTable attribute), [1] (IntracellularStimuliTable attribute), [1] (NWBFileGeneralExtracellularEphysElectrodes attribute) (PlaneSegmentation attribute), [1] (RepetitionsTable attribute), [1] (SequentialRecordingsTable attribute), [1] (SimultaneousRecordingsTable attribute), [1] (SweepTable attribute), [1] (TimeIntervals attribute), [1], [2], [3], [4], [5], [6], [7], [8] (Units attribute), [1] identifier (NWBFile attribute), [1] image (Images attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] image_mask (PlaneSegmentation attribute), [1] imp (NWBFileGeneralExtracellularEphysElectrodes attribute) import_module() (PydanticProvider method) imported (NamespacesAdapter attribute) imports (SchemaAdapter attribute) indices (CSRMatrix attribute), [1], [2], [3], [4], [5] indptr (CSRMatrix attribute), [1], [2], [3], [4], [5] initial_access_resistance (IntracellularElectrode attribute), [1] INJECTED_FIELDS (NWBPydanticGenerator attribute) instances (KeyMap attribute)

institution (NWBFileGeneral attribute) int (FlatDtype attribute) Int (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) int16 (FlatDtype attribute) Int16 (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) int32 (FlatDtype attribute) Int32 (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) int64 (FlatDtype attribute) Int64 (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) int8 (FlatDtype attribute) Int8 (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) intensity (OnePhotonSeries attribute), [1] intervals (NWBFile attribute), [1] intracellular_electrode (NWBFileGeneralIntracellularEphys attribute) intracellular_ephys (NWBFileGeneral attribute) intracellular_recordings (NWBFileGeneralIntracellularEphys attribute) invalid_times (NWBFileIntervals attribute) is_1d() (in module nwb_linkml.adapters.dataset) isocalendar() (date method), [1] isodatetime (FlatDtype attribute) isoformat() (date method), [1] (datetime method), [1] isoweekday() (date method), [1]

J

json() (BaseModel method), [1]

K

key (MAP_TYPES attribute) KeyMap (class in nwb_linkml.maps.postload)

keys (ExternalResources attribute), [1] keywords (NWBFileGeneral attribute)

L

lab (NWBFileGeneral attribute) lab_meta_data (NWBFileGeneral attribute) linkable (Dataset attribute) (Group attribute) Linked Data linkml_meta (AbstractFeatureSeries attribute), [1] (AbstractFeatureSeriesData attribute) (AlignedDynamicTable attribute), [1], [2] (AnnotationSeries attribute), [1] (Arraylike attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13] (BehavioralEpochs attribute), [1] (BehavioralEvents attribute), [1] (BehavioralTimeSeries attribute), [1] (Clustering attribute), [1] (ClusterWaveforms attribute), [1] (ClusterWaveformsWaveformMean attribute) (ClusterWaveformsWaveformSd attribute) (CompassDirection attribute), [1] (Container attribute), [1], [2], [3], [4], [5] (CorrectedImageStack attribute), [1] (CSRMatrix attribute), [1], [2], [3], [4], [5] (CSRMatrixData attribute), [1], [2] (CSRMatrixIndices attribute), [1], [2] (CSRMatrixIndptr attribute), [1], [2] (CurrentClampSeries attribute), [1] (CurrentClampSeriesData attribute) (CurrentClampStimulusSeries attribute), [1] (CurrentClampStimulusSeriesData attribute) (Data attribute), [1], [2], [3], [4], [5] (DecompositionSeries attribute), [1] (DecompositionSeriesBands attribute) (DecompositionSeriesBandsBandLimits attribute) (DecompositionSeriesData attribute) (DecompositionSeriesSourceChannels attribute) (Device attribute), [1] (DfOverF attribute), [1] (DynamicTable attribute), [1], [2], [3], [4], [5] (DynamicTableRegion attribute), [1], [2], [3], [4], [5] (ElectricalSeries attribute), [1] (ElectricalSeriesData attribute) (ElectricalSeriesElectrodes attribute) (ElectrodeGroup attribute), [1] (ElementIdentifiers attribute), [1], [2], [3], [4], [5] (EnumData attribute), [1] (EventDetection attribute), [1] (EventWaveform attribute), [1] (ExperimentalConditionsTable attribute), [1] (ExperimentalConditionsTableRepetitions attribute) (ExperimentalConditionsTableRepetitionsIndex attribute) (ExternalResources attribute), [1] (EyeTracking attribute), [1] (FeatureExtraction attribute), [1] (FeatureExtractionElectrodes attribute) (FeatureExtractionFeatures attribute) (FilteredEphys attribute), [1] (Fluorescence attribute), [1] (GrayscaleImage attribute), [1] (Image attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (ImageMaskSeries attribute), [1] (ImageReferences attribute), [1], [2] (Images attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (ImageSegmentation attribute), [1] (ImageSeries attribute), [1] (ImageSeriesData attribute) (ImagesOrderOfImages attribute), [1] (ImagingPlane attribute), [1] (ImagingRetinotopy attribute), [1] (ImagingRetinotopyAxis1PhaseMap attribute) (ImagingRetinotopyAxis1PowerMap attribute) (ImagingRetinotopyAxis2PhaseMap attribute) (ImagingRetinotopyAxis2PowerMap attribute) (ImagingRetinotopyFocalDepthImage attribute) (ImagingRetinotopySignMap attribute) (ImagingRetinotopyVasculatureImage attribute) (Index attribute), [1], [2] (IndexSeries attribute), [1] (IntervalSeries attribute), [1] (IntracellularElectrode attribute), [1] (IntracellularElectrodesTable attribute), [1] (IntracellularRecordingsTable attribute), [1] (IntracellularResponsesTable attribute), [1] (IntracellularResponsesTableResponse attribute) (IntracellularStimuliTable attribute), [1] (IntracellularStimuliTableStimulus attribute) (IZeroClampSeries attribute), [1] (LabMetaData attribute), [1] (LFP attribute), [1] (MotionCorrection attribute), [1] (NWBContainer attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (NWBData attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (NWBDataInterface attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (NWBFile attribute), [1] (NWBFileGeneral attribute) (NWBFileGeneralExtracellularEphys attribute) (NWBFileGeneralExtracellularEphysElectrodes attribute) (NWBFileGeneralIntracellularEphys attribute) (NWBFileGeneralSourceScript attribute) (NWBFileIntervals attribute) (NWBFileStimulus attribute) (OnePhotonSeries attribute), [1] (OpticalChannel attribute), [1] (OpticalSeries attribute), [1] (OpticalSeriesData attribute) (OpticalSeriesFieldOfView attribute) (OptogeneticSeries attribute), [1] (OptogeneticStimulusSite attribute), [1] (PatchClampSeries attribute), [1] (PlaneSegmentation attribute), [1] (PlaneSegmentationImageMask attribute) (PlaneSegmentationPixelMaskIndex attribute) (PlaneSegmentationVoxelMaskIndex attribute) (Position attribute), [1] (ProcessingModule attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (PupilTracking attribute), [1] (RepetitionsTable attribute), [1] (RepetitionsTableSequentialRecordings attribute) (RepetitionsTableSequentialRecordingsIndex attribute) (RGBAImage attribute), [1] (RGBImage attribute), [1] (RoiResponseSeries attribute), [1] (RoiResponseSeriesData attribute) (RoiResponseSeriesRois attribute) (ScratchData attribute), [1] (SequentialRecordingsTable attribute), [1] (SequentialRecordingsTableSimultaneousRecordings attribute) (SequentialRecordingsTableSimultaneousRecordingsIndex attribute) (SimpleMultiContainer attribute), [1], [2] (SimultaneousRecordingsTable attribute), [1] (SimultaneousRecordingsTableRecordings attribute) (SimultaneousRecordingsTableRecordingsIndex attribute) (SpatialSeries attribute), [1] (SpatialSeriesData attribute) (SpikeEventSeries attribute), [1] (SpikeEventSeriesData attribute) (Subject attribute), [1] (SubjectAge attribute) (SweepTable attribute), [1] (SweepTableSeriesIndex attribute) (TimeIntervals attribute), [1], [2], [3], [4], [5], [6], [7], [8] (TimeIntervalsTagsIndex attribute), [1], [2], [3], [4], [5], [6], [7] (TimeIntervalsTimeseries attribute) (TimeIntervalsTimeseriesIndex attribute), [1], [2], [3], [4], [5], [6], [7] (TimeSeries attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (TimeSeriesData attribute), [1], [2], [3], [4], [5], [6], [7], [8] (TimeSeriesReferenceVectorData attribute), [1], [2], [3] (TimeSeriesStartingTime attribute), [1], [2], [3], [4], [5], [6], [7], [8] (TimeSeriesSync attribute), [1], [2], [3], [4], [5], [6], [7], [8] (TwoPhotonSeries attribute), [1] (TwoPhotonSeriesFieldOfView attribute) (Units attribute), [1] (UnitsElectrodes attribute) (UnitsElectrodesIndex attribute) (UnitsObsIntervals attribute) (UnitsObsIntervalsIndex attribute) (UnitsSpikeTimes attribute) (UnitsSpikeTimesIndex attribute) (UnitsWaveformMean attribute) (UnitsWaveforms attribute) (UnitsWaveformSd attribute) (UnitsWaveformsIndex attribute) (UnitsWaveformsIndexIndex attribute) (VectorData attribute), [1], [2], [3], [4], [5] (VectorIndex attribute), [1], [2], [3], [4], [5] (VoltageClampSeries attribute), [1] (VoltageClampSeriesCapacitanceFast attribute) (VoltageClampSeriesCapacitanceSlow attribute) (VoltageClampSeriesData attribute) (VoltageClampSeriesResistanceCompBandwidth attribute) (VoltageClampSeriesResistanceCompCorrection attribute) (VoltageClampSeriesResistanceCompPrediction attribute) (VoltageClampSeriesWholeCellCapacitanceComp attribute) (VoltageClampSeriesWholeCellSeriesResistanceComp attribute) (VoltageClampStimulusSeries attribute), [1] (VoltageClampStimulusSeriesData attribute)

LinkMLProvider (class in nwb_linkml.providers.schema) LinkMLSchemaBuild (class in nwb_linkml.providers.schema) links (Group attribute) load_namespace_adapter() (in module nwb_linkml.io.schema) load_namespaces() (in module nwb_linkml.io.schema) load_nwb_core() (in module nwb_linkml.io.schema) load_schema_file() (in module nwb_linkml.io.schema) load_yaml() (in module nwb_linkml.io.schema) location (ElectrodeGroup attribute), [1] (IntracellularElectrode attribute), [1] (NWBFileGeneralExtracellularEphysElectrodes attribute) (OptogeneticStimulusSite attribute), [1] long (FlatDtype attribute) LongLong (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace)

M

main (SplitSchema attribute) make_arraylike() (in module nwb_linkml.adapters.dataset) make_provider() (HDF5IO method) manufacturer (Device attribute), [1] Map1DVector (class in nwb_linkml.adapters.dataset) MAP_TYPES (class in nwb_linkml.maps.postload) MapArraylike (class in nwb_linkml.adapters.dataset) MapArrayLikeAttributes (class in nwb_linkml.adapters.dataset) MapListlike (class in nwb_linkml.adapters.dataset) MapNVectors (class in nwb_linkml.adapters.dataset) MapScalar (class in nwb_linkml.adapters.dataset) MapScalarAttributes (class in nwb_linkml.adapters.dataset) max (date attribute), [1] (datetime attribute), [1] metric (DecompositionSeries attribute), [1] microsecond (datetime attribute), [1] min (date attribute), [1] (datetime attribute), [1] minute (datetime attribute), [1] model_computed_fields (BaseModel property), [1] model_construct() (BaseModel class method), [1] model_copy() (BaseModel method), [1] model_dump() (BaseModel method), [1] model_dump_json() (BaseModel method), [1] model_extra (BaseModel property), [1] model_fields_set (BaseModel property), [1] model_json_schema() (BaseModel class method), [1] model_parametrized_name() (BaseModel class method), [1] model_post_init() (BaseModel method), [1] (NamespacesAdapter method) (SchemaAdapter method) model_rebuild() (BaseModel class method), [1] MODEL_STEM (EctopicModelFinder attribute) model_validate() (BaseModel class method), [1] model_validate_json() (BaseModel class method), [1] model_validate_strings() (BaseModel class method), [1] module nwb_linkml.adapters nwb_linkml.adapters.adapter nwb_linkml.adapters.classes nwb_linkml.adapters.dataset nwb_linkml.adapters.group nwb_linkml.adapters.namespaces nwb_linkml.adapters.schema nwb_linkml.generators.pydantic nwb_linkml.io.hdf5 nwb_linkml.io.schema nwb_linkml.maps.dtype nwb_linkml.maps.naming nwb_linkml.maps.postload nwb_linkml.maps.quantity nwb_linkml.models nwb_linkml.models.pydantic nwb_linkml.models.pydantic.core nwb_linkml.models.pydantic.core.v2_2_0 nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_base nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_epoch nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_language nwb_linkml.models.pydantic.core.v2_2_1 nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_base nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_epoch nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_language nwb_linkml.models.pydantic.core.v2_2_2 nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_base nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_epoch nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_language nwb_linkml.models.pydantic.core.v2_2_4 nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_base nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_epoch nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_language nwb_linkml.models.pydantic.core.v2_2_5 nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_base nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_epoch nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_language nwb_linkml.models.pydantic.core.v2_3_0 nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_base nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_epoch nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_language nwb_linkml.models.pydantic.core.v2_4_0 nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_base nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_epoch nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_language nwb_linkml.models.pydantic.core.v2_5_0 nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_base nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_language nwb_linkml.models.pydantic.core.v2_6_0_alpha nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_base nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_behavior nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_device nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ecephys nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_epoch nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_file nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_icephys nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_image nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_language nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_misc nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ogen nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ophys nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_retinotopy nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace, [1] nwb_linkml.models.pydantic.hdmf_common nwb_linkml.models.pydantic.hdmf_common.v1_1_0 nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_nwb_language nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_sparse nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_table nwb_linkml.models.pydantic.hdmf_common.v1_1_0.namespace nwb_linkml.models.pydantic.hdmf_common.v1_1_2 nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_nwb_language nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_sparse nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_table nwb_linkml.models.pydantic.hdmf_common.v1_1_2.namespace nwb_linkml.models.pydantic.hdmf_common.v1_1_3 nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_nwb_language nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_sparse nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_table nwb_linkml.models.pydantic.hdmf_common.v1_1_3.namespace nwb_linkml.models.pydantic.hdmf_common.v1_5_0 nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_base nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_nwb_language nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_sparse nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_table nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace, [1] nwb_linkml.models.pydantic.hdmf_experimental nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0 nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_experimental nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_nwb_language nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_resources nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.namespace nwb_linkml.providers.git nwb_linkml.providers.schema nwb_linkml.types.ndarray nwb_schema_language.datamodel.nwb_schema_pydantic

module_case() (in module nwb_linkml.maps.naming) module_name() (PydanticProvider class method) month (date attribute), [1]

N

name (AbstractFeatureSeries attribute), [1] (AbstractFeatureSeriesData attribute) (AlignedDynamicTable attribute), [1], [2] (AnnotationSeries attribute), [1] (Attribute attribute) (BehavioralEpochs attribute), [1] (BehavioralEvents attribute), [1] (BehavioralTimeSeries attribute), [1] (Clustering attribute), [1] (ClusterWaveforms attribute), [1] (ClusterWaveformsWaveformMean attribute) (ClusterWaveformsWaveformSd attribute) (CompassDirection attribute), [1] (CompoundDtype attribute) (Container attribute), [1], [2], [3], [4], [5] (CorrectedImageStack attribute), [1] (CSRMatrix attribute), [1], [2], [3], [4], [5] (CSRMatrixData attribute), [1], [2] (CSRMatrixIndices attribute), [1], [2] (CSRMatrixIndptr attribute), [1], [2] (CurrentClampSeries attribute), [1] (CurrentClampSeriesData attribute) (CurrentClampStimulusSeries attribute), [1] (CurrentClampStimulusSeriesData attribute) (Data attribute), [1], [2], [3], [4], [5] (Dataset attribute) (DecompositionSeries attribute), [1] (DecompositionSeriesBands attribute) (DecompositionSeriesBandsBandLimits attribute) (DecompositionSeriesData attribute) (DecompositionSeriesSourceChannels attribute) (Device attribute), [1] (DfOverF attribute), [1] (DynamicTable attribute), [1], [2], [3], [4], [5] (DynamicTableRegion attribute), [1], [2], [3], [4], [5] (ElectricalSeries attribute), [1] (ElectricalSeriesData attribute) (ElectricalSeriesElectrodes attribute) (ElectrodeGroup attribute), [1] (ElementIdentifiers attribute), [1], [2], [3], [4], [5] (Enum attribute), [1] (EnumData attribute), [1] (EventDetection attribute), [1] (EventWaveform attribute), [1] (ExperimentalConditionsTable attribute), [1] (ExperimentalConditionsTableRepetitions attribute) (ExperimentalConditionsTableRepetitionsIndex attribute) (ExternalResources attribute), [1] (EyeTracking attribute), [1] (FeatureExtraction attribute), [1] (FeatureExtractionElectrodes attribute) (FeatureExtractionFeatures attribute) (FilteredEphys attribute), [1] (Fluorescence attribute), [1] (GrayscaleImage attribute), [1] (Group attribute) (Image attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (ImageMaskSeries attribute), [1] (ImageReferences attribute), [1], [2] (Images attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (ImageSegmentation attribute), [1] (ImageSeries attribute), [1] (ImageSeriesData attribute) (ImagesOrderOfImages attribute), [1] (ImagingPlane attribute), [1] (ImagingRetinotopy attribute), [1] (ImagingRetinotopyAxis1PhaseMap attribute) (ImagingRetinotopyAxis1PowerMap attribute) (ImagingRetinotopyAxis2PhaseMap attribute) (ImagingRetinotopyAxis2PowerMap attribute) (ImagingRetinotopyFocalDepthImage attribute) (ImagingRetinotopySignMap attribute) (ImagingRetinotopyVasculatureImage attribute) (Index attribute), [1], [2] (IndexSeries attribute), [1] (IntervalSeries attribute), [1] (IntracellularElectrode attribute), [1] (IntracellularElectrodesTable attribute), [1] (IntracellularRecordingsTable attribute), [1] (IntracellularResponsesTable attribute), [1] (IntracellularResponsesTableResponse attribute) (IntracellularStimuliTable attribute), [1] (IntracellularStimuliTableStimulus attribute) (IZeroClampSeries attribute), [1] (LabMetaData attribute), [1] (LFP attribute), [1] (Link attribute) (LinkMLSchemaBuild attribute) (MotionCorrection attribute), [1] (Namespace attribute) (NamespaceRepo attribute) (NWBContainer attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (NWBData attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (NWBDataInterface attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (NWBFile attribute), [1] (NWBFileGeneral attribute) (NWBFileGeneralExtracellularEphys attribute) (NWBFileGeneralExtracellularEphysElectrodes attribute) (NWBFileGeneralIntracellularEphys attribute) (NWBFileGeneralSourceScript attribute) (NWBFileIntervals attribute) (NWBFileStimulus attribute) (OnePhotonSeries attribute), [1] (OpticalChannel attribute), [1] (OpticalSeries attribute), [1] (OpticalSeriesData attribute) (OpticalSeriesFieldOfView attribute) (OptogeneticSeries attribute), [1] (OptogeneticStimulusSite attribute), [1] (PatchClampSeries attribute), [1] (PlaneSegmentation attribute), [1] (PlaneSegmentationImageMask attribute) (PlaneSegmentationPixelMaskIndex attribute) (PlaneSegmentationVoxelMaskIndex attribute) (Position attribute), [1] (ProcessingModule attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (PupilTracking attribute), [1] (RepetitionsTable attribute), [1] (RepetitionsTableSequentialRecordings attribute) (RepetitionsTableSequentialRecordingsIndex attribute) (RGBAImage attribute), [1] (RGBImage attribute), [1] (RoiResponseSeries attribute), [1] (RoiResponseSeriesData attribute) (RoiResponseSeriesRois attribute) (SchemaAdapter property) (ScratchData attribute), [1] (SequentialRecordingsTable attribute), [1] (SequentialRecordingsTableSimultaneousRecordings attribute) (SequentialRecordingsTableSimultaneousRecordingsIndex attribute) (SimpleMultiContainer attribute), [1], [2] (SimultaneousRecordingsTable attribute), [1] (SimultaneousRecordingsTableRecordings attribute) (SimultaneousRecordingsTableRecordingsIndex attribute) (SpatialSeries attribute), [1] (SpatialSeriesData attribute) (SpikeEventSeries attribute), [1] (SpikeEventSeriesData attribute) (Subject attribute), [1] (SubjectAge attribute) (SweepTable attribute), [1] (SweepTableSeriesIndex attribute) (TimeIntervals attribute), [1], [2], [3], [4], [5], [6], [7], [8] (TimeIntervalsTagsIndex attribute), [1], [2], [3], [4], [5], [6], [7] (TimeIntervalsTimeseries attribute) (TimeIntervalsTimeseriesIndex attribute), [1], [2], [3], [4], [5], [6], [7] (TimeSeries attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (TimeSeriesData attribute), [1], [2], [3], [4], [5], [6], [7], [8] (TimeSeriesReferenceVectorData attribute), [1], [2], [3] (TimeSeriesStartingTime attribute), [1], [2], [3], [4], [5], [6], [7], [8] (TimeSeriesSync attribute), [1], [2], [3], [4], [5], [6], [7], [8] (TwoPhotonSeries attribute), [1] (TwoPhotonSeriesFieldOfView attribute) (Units attribute), [1] (UnitsElectrodes attribute) (UnitsElectrodesIndex attribute) (UnitsObsIntervals attribute) (UnitsObsIntervalsIndex attribute) (UnitsSpikeTimes attribute) (UnitsSpikeTimesIndex attribute) (UnitsWaveformMean attribute) (UnitsWaveforms attribute) (UnitsWaveformSd attribute) (UnitsWaveformsIndex attribute) (UnitsWaveformsIndexIndex attribute) (VectorData attribute), [1], [2], [3], [4], [5] (VectorIndex attribute), [1], [2], [3], [4], [5] (VoltageClampSeries attribute), [1] (VoltageClampSeriesCapacitanceFast attribute) (VoltageClampSeriesCapacitanceSlow attribute) (VoltageClampSeriesData attribute) (VoltageClampSeriesResistanceCompBandwidth attribute) (VoltageClampSeriesResistanceCompCorrection attribute) (VoltageClampSeriesResistanceCompPrediction attribute) (VoltageClampSeriesWholeCellCapacitanceComp attribute) (VoltageClampSeriesWholeCellSeriesResistanceComp attribute) (VoltageClampStimulusSeries attribute), [1] (VoltageClampStimulusSeriesData attribute) namespace (LinkMLSchemaBuild attribute) (Schema attribute) (SchemaAdapter attribute) (SCOPE_TYPES attribute) namespace_file (GitRepo property) namespace_path() (Provider method) namespace_schemas() (NamespacesAdapter method) namespaces (Namespaces attribute) (NamespacesAdapter attribute) NDArrayMeta (class in nwb_linkml.types.ndarray) NDArrayProxy (class in nwb_linkml.types.ndarray) needed_imports (NamespacesAdapter property) (SchemaAdapter property) NEEDS_NAME (MapArrayLikeAttributes attribute) neurodata_type_def (Dataset attribute) (Group attribute) neurodata_type_inc (Dataset attribute) (Group attribute) neurodata_types (Schema attribute) notes (NWBFileGeneral attribute) (ScratchData attribute), [1]

now() (datetime method), [1] num (Clustering attribute), [1] Number (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) numeric (FlatDtype attribute) NWB Schema Language nwb_linkml.adapters module nwb_linkml.adapters.adapter module nwb_linkml.adapters.classes module nwb_linkml.adapters.dataset module nwb_linkml.adapters.group module nwb_linkml.adapters.namespaces module nwb_linkml.adapters.schema module nwb_linkml.generators.pydantic module nwb_linkml.io.hdf5 module nwb_linkml.io.schema module nwb_linkml.maps.dtype module nwb_linkml.maps.naming module nwb_linkml.maps.postload module nwb_linkml.maps.quantity module nwb_linkml.models module nwb_linkml.models.pydantic module nwb_linkml.models.pydantic.core module nwb_linkml.models.pydantic.core.v2_2_0 module nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_base module nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_epoch module nwb_linkml.models.pydantic.core.v2_2_0.core_nwb_language module nwb_linkml.models.pydantic.core.v2_2_1 module nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_base module nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_epoch module nwb_linkml.models.pydantic.core.v2_2_1.core_nwb_language module nwb_linkml.models.pydantic.core.v2_2_2 module nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_base module nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_epoch module nwb_linkml.models.pydantic.core.v2_2_2.core_nwb_language module nwb_linkml.models.pydantic.core.v2_2_4 module nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_base module nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_epoch module nwb_linkml.models.pydantic.core.v2_2_4.core_nwb_language module nwb_linkml.models.pydantic.core.v2_2_5 module nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_base module nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_epoch module nwb_linkml.models.pydantic.core.v2_2_5.core_nwb_language module nwb_linkml.models.pydantic.core.v2_3_0 module nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_base module nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_epoch module nwb_linkml.models.pydantic.core.v2_3_0.core_nwb_language module nwb_linkml.models.pydantic.core.v2_4_0 module nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_base module nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_epoch module nwb_linkml.models.pydantic.core.v2_4_0.core_nwb_language module nwb_linkml.models.pydantic.core.v2_5_0 module nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_base module nwb_linkml.models.pydantic.core.v2_5_0.core_nwb_language module nwb_linkml.models.pydantic.core.v2_6_0_alpha module nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_base module nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_behavior module nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_device module nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ecephys module nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_epoch module nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_file module nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_icephys module nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_image module nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_language module nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_misc module nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ogen module nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_ophys module nwb_linkml.models.pydantic.core.v2_6_0_alpha.core_nwb_retinotopy module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace module, [1] nwb_linkml.models.pydantic.hdmf_common module nwb_linkml.models.pydantic.hdmf_common.v1_1_0 module nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_nwb_language module nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_sparse module nwb_linkml.models.pydantic.hdmf_common.v1_1_0.hdmf_common_table module nwb_linkml.models.pydantic.hdmf_common.v1_1_0.namespace module nwb_linkml.models.pydantic.hdmf_common.v1_1_2 module nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_nwb_language module nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_sparse module nwb_linkml.models.pydantic.hdmf_common.v1_1_2.hdmf_common_table module nwb_linkml.models.pydantic.hdmf_common.v1_1_2.namespace module nwb_linkml.models.pydantic.hdmf_common.v1_1_3 module nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_nwb_language module nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_sparse module nwb_linkml.models.pydantic.hdmf_common.v1_1_3.hdmf_common_table module nwb_linkml.models.pydantic.hdmf_common.v1_1_3.namespace module nwb_linkml.models.pydantic.hdmf_common.v1_5_0 module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_base module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_nwb_language module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_sparse module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.hdmf_common_table module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace module, [1] nwb_linkml.models.pydantic.hdmf_experimental module nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0 module nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_experimental module nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_nwb_language module nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.hdmf_experimental_resources module nwb_linkml.models.pydantic.hdmf_experimental.v0_1_0.namespace module nwb_linkml.providers.git module nwb_linkml.providers.schema module nwb_linkml.types.ndarray module nwb_schema_language.datamodel.nwb_schema_pydantic module nwb_version (NWBFile attribute), [1] NWBPydanticGenerator (class in nwb_linkml.generators.pydantic)

O

object (ReftypeOptions attribute) object_keys (ExternalResources attribute), [1] objects (ExternalResources attribute), [1] obs_intervals (Units attribute), [1] obs_intervals_index (Units attribute), [1]

offset (TimeSeriesData attribute), [1] one_or_many (QuantityEnum attribute) optogenetics (NWBFileGeneral attribute) optophysiology (NWBFileGeneral attribute) order_of_images (Images attribute), [1], [2] orientation (OpticalSeries attribute), [1]

P

parent (ClassAdapter attribute) parse_file() (BaseModel class method), [1] parse_obj() (BaseModel class method), [1] parse_raw() (BaseModel class method), [1] path (LinkMLProvider property) (NamespaceRepo attribute) (Provider property) (PydanticProvider property) (SchemaAdapter attribute) (SchemaProvider property) peak_over_rms (Clustering attribute), [1] pharmacology (NWBFileGeneral attribute) phase (KeyMap attribute) PHASES (class in nwb_linkml.maps.postload) pixel_mask (PlaneSegmentation attribute), [1] pixel_mask_index (PlaneSegmentation attribute), [1] PLUS_SIGN (QuantityEnum attribute)

pmt_gain (OnePhotonSeries attribute), [1] (TwoPhotonSeries attribute), [1] populate_imports() (NamespacesAdapter method) position (ElectrodeGroup attribute), [1] postload (PHASES attribute) power (OnePhotonSeries attribute), [1] presentation (NWBFileStimulus attribute) processing (NWBFile attribute), [1] protocol (NWBFileGeneral attribute) provide_from_git() (NamespaceRepo method) Provider (class in nwb_linkml.providers.schema) PROVIDES (LinkMLProvider attribute) (Provider attribute) (PydanticProvider attribute) PROVIDES_CLASS (LinkMLProvider attribute) (Provider attribute) pydantic_version (NWBPydanticGenerator attribute) PydanticProvider (class in nwb_linkml.providers.schema)

Q

quantity (Dataset attribute) (Group attribute) (Link attribute)

QuantityEnum (class in nwb_schema_language.datamodel.nwb_schema_pydantic) QUESTION_MARK (QuantityEnum attribute)

R

rate (TimeSeriesStartingTime attribute), [1], [2], [3], [4], [5], [6], [7], [8] read() (HDF5IO method) read_specs_as_dicts() (in module nwb_linkml.io.hdf5) recordings (SimultaneousRecordingsTable attribute), [1] recordings_index (SimultaneousRecordingsTable attribute), [1] ref (ReftypeOptions attribute) reference (NWBFileGeneralExtracellularEphysElectrodes attribute) (ReftypeOptions attribute) (SubjectAge attribute) reference_frame (SpatialSeries attribute), [1] reference_images (PlaneSegmentation attribute), [1] reftype (ReferenceDtype attribute) ReftypeOptions (class in nwb_schema_language.datamodel.nwb_schema_pydantic) region (ReftypeOptions attribute) rel_x (NWBFileGeneralExtracellularEphysElectrodes attribute) rel_y (NWBFileGeneralExtracellularEphysElectrodes attribute) rel_z (NWBFileGeneralExtracellularEphysElectrodes attribute) related_publications (NWBFileGeneral attribute) relative_path() (in module nwb_linkml.maps.naming) remote (GitRepo property) repetitions (ExperimentalConditionsTable attribute), [1] (NWBFileGeneralIntracellularEphys attribute)

repetitions_index (ExperimentalConditionsTable attribute), [1] replace() (date method), [1] (datetime method), [1] repository (NamespaceRepo attribute) required (Attribute attribute) resistance (IntracellularElectrode attribute), [1] resistance_comp_bandwidth (VoltageClampSeries attribute), [1] resistance_comp_correction (VoltageClampSeries attribute), [1] resistance_comp_prediction (VoltageClampSeries attribute), [1] resolution (date attribute), [1] (datetime attribute), [1] (GrayscaleImage attribute), [1] (Image attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (RGBAImage attribute), [1] (RGBImage attribute), [1] (TimeSeriesData attribute), [1], [2], [3], [4], [5], [6], [7], [8] (UnitsSpikeTimes attribute) resources (ExternalResources attribute), [1] response (IntracellularResponsesTable attribute), [1] responses (IntracellularRecordingsTable attribute), [1] result (LinkMLSchemaBuild attribute) rois (RoiResponseSeries attribute), [1]

S

sampling_rate (UnitsWaveformMean attribute) (UnitsWaveforms attribute) (UnitsWaveformSd attribute) scan_line_rate (OnePhotonSeries attribute), [1] (TwoPhotonSeries attribute), [1] schema language schema() (BaseModel class method), [1] schema_ (Namespace attribute) schema_json() (BaseModel class method), [1] schema_map (NWBPydanticGenerator attribute) schema_namespace() (NamespacesAdapter method) SchemaProvider (class in nwb_linkml.providers.schema) schemas (BuildResult attribute) (NamespacesAdapter attribute) scope (KeyMap attribute) scope_type (KeyMap attribute) SCOPE_TYPES (class in nwb_linkml.maps.postload) scratch (NWBFile attribute), [1] seal (IntracellularElectrode attribute), [1] second (datetime attribute), [1] sequential_recordings (NWBFileGeneralIntracellularEphys attribute) (RepetitionsTable attribute), [1] sequential_recordings_index (RepetitionsTable attribute), [1] serialize() (NWBPydanticGenerator method) series (SweepTable attribute), [1] series_index (SweepTable attribute), [1] session_description (NWBFile attribute), [1] session_id (NWBFileGeneral attribute) session_start_time (NWBFile attribute), [1] sex (Subject attribute), [1] shape (Attribute attribute) (CSRMatrix attribute), [1], [2], [3], [4], [5] (Dataset attribute) short (FlatDtype attribute) Short (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) sign_map (ImagingRetinotopy attribute), [1] simultaneous_recordings (NWBFileGeneralIntracellularEphys attribute) (SequentialRecordingsTable attribute), [1] simultaneous_recordings_index (SequentialRecordingsTable attribute), [1] SKIP_CLASSES (NWBPydanticGenerator attribute) SKIP_ENUM (NWBPydanticGenerator attribute) SKIP_SLOTS (NWBPydanticGenerator attribute) slice (IntracellularElectrode attribute), [1] slices (NWBFileGeneral attribute) slots (BuildResult attribute) sort_classes() (NWBPydanticGenerator method) source (KeyMap attribute) (Schema attribute) source_channels (DecompositionSeries attribute), [1] source_idx (EventDetection attribute), [1] source_script (NWBFileGeneral attribute) species (Subject attribute), [1] spike_times (Units attribute), [1] spike_times_index (Units attribute), [1] split (NWBPydanticGenerator attribute) (SplitSchema attribute) SplitSchema (class in nwb_linkml.adapters.schema) start_time (TimeIntervals attribute), [1], [2], [3], [4], [5], [6], [7], [8] starting_time (AbstractFeatureSeries attribute), [1] (AnnotationSeries attribute), [1] (CurrentClampSeries attribute), [1] (CurrentClampStimulusSeries attribute), [1] (DecompositionSeries attribute), [1] (ElectricalSeries attribute), [1] (ImageMaskSeries attribute), [1] (ImageSeries attribute), [1] (IndexSeries attribute), [1] (IntervalSeries attribute), [1] (IZeroClampSeries attribute), [1] (OnePhotonSeries attribute), [1] (OpticalSeries attribute), [1] (OptogeneticSeries attribute), [1] (PatchClampSeries attribute), [1] (RoiResponseSeries attribute), [1] (SpatialSeries attribute), [1] (SpikeEventSeries attribute), [1] (TimeSeries attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (TwoPhotonSeries attribute), [1] (VoltageClampSeries attribute), [1] (VoltageClampStimulusSeries attribute), [1]

stimuli (IntracellularRecordingsTable attribute), [1] stimulus (IntracellularStimuliTable attribute), [1] (NWBFile attribute), [1] (NWBFileGeneral attribute) stimulus_description (CurrentClampSeries attribute), [1] (CurrentClampStimulusSeries attribute), [1] (IZeroClampSeries attribute), [1] (PatchClampSeries attribute), [1] (VoltageClampSeries attribute), [1] (VoltageClampStimulusSeries attribute), [1] stimulus_type (SequentialRecordingsTable attribute), [1] stop_time (TimeIntervals attribute), [1], [2], [3], [4], [5], [6], [7], [8] strain (Subject attribute), [1] strftime() (date method), [1] String (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) strptime() (datetime method), [1] subject (NWBFileGeneral attribute) subject_id (Subject attribute), [1] surgery (NWBFileGeneral attribute) sweep_number (CurrentClampSeries attribute), [1] (CurrentClampStimulusSeries attribute), [1] (IZeroClampSeries attribute), [1] (PatchClampSeries attribute), [1] (SweepTable attribute), [1] (VoltageClampSeries attribute), [1] (VoltageClampStimulusSeries attribute), [1] sweep_table (NWBFileGeneralIntracellularEphys attribute) sync (AbstractFeatureSeries attribute), [1] (AnnotationSeries attribute), [1] (CurrentClampSeries attribute), [1] (CurrentClampStimulusSeries attribute), [1] (DecompositionSeries attribute), [1] (ElectricalSeries attribute), [1] (ImageMaskSeries attribute), [1] (ImageSeries attribute), [1] (IndexSeries attribute), [1] (IntervalSeries attribute), [1] (IZeroClampSeries attribute), [1] (OnePhotonSeries attribute), [1] (OpticalSeries attribute), [1] (OptogeneticSeries attribute), [1] (PatchClampSeries attribute), [1] (RoiResponseSeries attribute), [1] (SpatialSeries attribute), [1] (SpikeEventSeries attribute), [1] (TimeSeries attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (TwoPhotonSeries attribute), [1] (VoltageClampSeries attribute), [1] (VoltageClampStimulusSeries attribute), [1]

T

table (DecompositionSeriesSourceChannels attribute) (DynamicTableRegion attribute), [1], [2], [3], [4], [5] (ElectricalSeriesElectrodes attribute) (ExperimentalConditionsTableRepetitions attribute) (FeatureExtractionElectrodes attribute) (RepetitionsTableSequentialRecordings attribute) (RoiResponseSeriesRois attribute) (SequentialRecordingsTableSimultaneousRecordings attribute) (SimultaneousRecordingsTableRecordings attribute) (UnitsElectrodes attribute) tag (GitRepo property) tags (TimeIntervals attribute), [1], [2], [3], [4], [5], [6], [7], [8] tags_index (TimeIntervals attribute), [1], [2], [3], [4], [5], [6], [7], [8] target (ExperimentalConditionsTableRepetitionsIndex attribute) (Index attribute), [1], [2] (KeyMap attribute) (PlaneSegmentationPixelMaskIndex attribute) (PlaneSegmentationVoxelMaskIndex attribute) (RepetitionsTableSequentialRecordingsIndex attribute) (SequentialRecordingsTableSimultaneousRecordingsIndex attribute) (SimultaneousRecordingsTableRecordingsIndex attribute) (SweepTableSeriesIndex attribute) (TimeIntervalsTagsIndex attribute), [1], [2], [3], [4], [5], [6], [7] (TimeIntervalsTimeseriesIndex attribute), [1], [2], [3], [4], [5], [6], [7] (UnitsElectrodesIndex attribute) (UnitsObsIntervalsIndex attribute) (UnitsSpikeTimesIndex attribute) (UnitsWaveformsIndex attribute) (UnitsWaveformsIndexIndex attribute) (VectorIndex attribute), [1], [2], [3], [4], [5] target_type (Link attribute) (ReferenceDtype attribute) temp_directory (GitRepo property) templates (NWBFileStimulus attribute) text (FlatDtype attribute) time() (datetime method), [1] time_intervals (NWBFileIntervals attribute) times (Clustering attribute), [1] (EventDetection attribute), [1] (FeatureExtraction attribute), [1]

timeseries (TimeIntervals attribute), [1], [2], [3], [4], [5], [6], [7], [8] timeseries_index (TimeIntervals attribute), [1], [2], [3], [4], [5], [6], [7], [8] timestamp() (datetime method), [1] timestamps (AbstractFeatureSeries attribute), [1] (AnnotationSeries attribute), [1] (CurrentClampSeries attribute), [1] (CurrentClampStimulusSeries attribute), [1] (DecompositionSeries attribute), [1] (ElectricalSeries attribute), [1] (ImageMaskSeries attribute), [1] (ImageSeries attribute), [1] (IndexSeries attribute), [1] (IntervalSeries attribute), [1] (IZeroClampSeries attribute), [1] (OnePhotonSeries attribute), [1] (OpticalSeries attribute), [1] (OptogeneticSeries attribute), [1] (PatchClampSeries attribute), [1] (RoiResponseSeries attribute), [1] (SpatialSeries attribute), [1] (SpikeEventSeries attribute), [1] (TimeSeries attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9] (TwoPhotonSeries attribute), [1] (VoltageClampSeries attribute), [1] (VoltageClampStimulusSeries attribute), [1] timestamps_reference_time (NWBFile attribute), [1] timetuple() (date method), [1] (datetime method), [1] timetz() (datetime method), [1] title (Schema attribute) to_yaml() (NamespacesAdapter method) today() (date method), [1] toordinal() (date method), [1] transform (KeyMap attribute) tree_root (LinkML_Meta attribute), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25], [26], [27], [28], [29], [30], [31], [32], [33], [34], [35], [36], [37], [38], [39], [40], [41], [42], [43], [44], [45], [46], [47], [48], [49], [50], [51], [52], [53], [54], [55], [56], [57], [58], [59], [60] trials (NWBFileIntervals attribute) truncate_file() (in module nwb_linkml.io.hdf5) types (BuildResult attribute) tzinfo (datetime attribute), [1] tzname() (datetime method), [1]

U

uint (FlatDtype attribute) UInt (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) uint16 (FlatDtype attribute) UInt16 (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) uint32 (FlatDtype attribute) UInt32 (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) uint64 (FlatDtype attribute) UInt64 (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) uint8 (FlatDtype attribute) UInt8 (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) Unicode (in module nwb_linkml.models.pydantic.core.v2_6_0_alpha.namespace) (in module nwb_linkml.models.pydantic.hdmf_common.v1_5_0.namespace) unit (AbstractFeatureSeriesData attribute) (CurrentClampSeriesData attribute) (CurrentClampStimulusSeriesData attribute) (DecompositionSeriesData attribute) (ElectricalSeriesData attribute) (ImagingRetinotopyAxis1PhaseMap attribute) (ImagingRetinotopyAxis1PowerMap attribute) (ImagingRetinotopyAxis2PhaseMap attribute) (ImagingRetinotopyAxis2PowerMap attribute) (SpatialSeriesData attribute) (SpikeEventSeriesData attribute) (TimeSeriesData attribute), [1], [2], [3], [4], [5], [6], [7], [8] (TimeSeriesStartingTime attribute), [1], [2], [3], [4], [5], [6], [7], [8] (UnitsWaveformMean attribute) (UnitsWaveforms attribute) (UnitsWaveformSd attribute) (VoltageClampSeriesCapacitanceFast attribute) (VoltageClampSeriesCapacitanceSlow attribute) (VoltageClampSeriesData attribute) (VoltageClampSeriesResistanceCompBandwidth attribute) (VoltageClampSeriesResistanceCompCorrection attribute) (VoltageClampSeriesResistanceCompPrediction attribute) (VoltageClampSeriesWholeCellCapacitanceComp attribute) (VoltageClampSeriesWholeCellSeriesResistanceComp attribute) (VoltageClampStimulusSeriesData attribute)

units (NWBFile attribute), [1] update_forward_refs() (BaseModel class method), [1] utcfromtimestamp() (datetime method), [1] utcnow() (datetime method), [1] utcoffset() (datetime method), [1] utctimetuple() (datetime method), [1] utf (FlatDtype attribute) utf8 (FlatDtype attribute) utf_8 (FlatDtype attribute)

V

validate() (BaseModel class method), [1] value (Attribute attribute) (CurrentClampSeriesData attribute) (CurrentClampStimulusSeriesData attribute) (Dataset attribute) (Enum attribute), [1] (NWBFileGeneralSourceScript attribute) (SubjectAge attribute) (TimeSeriesStartingTime attribute), [1], [2], [3], [4], [5], [6], [7], [8] (VoltageClampSeriesCapacitanceFast attribute) (VoltageClampSeriesCapacitanceSlow attribute) (VoltageClampSeriesData attribute) (VoltageClampSeriesResistanceCompBandwidth attribute) (VoltageClampSeriesResistanceCompCorrection attribute) (VoltageClampSeriesResistanceCompPrediction attribute) (VoltageClampSeriesWholeCellCapacitanceComp attribute) (VoltageClampSeriesWholeCellSeriesResistanceComp attribute) (VoltageClampStimulusSeriesData attribute) vasculature_image (ImagingRetinotopy attribute), [1] vector_data (AlignedDynamicTable attribute), [1], [2] (DecompositionSeriesBands attribute) (DynamicTable attribute), [1], [2], [3], [4], [5] (ExperimentalConditionsTable attribute), [1] (IntracellularElectrodesTable attribute), [1] (IntracellularRecordingsTable attribute), [1] (IntracellularResponsesTable attribute), [1] (IntracellularStimuliTable attribute), [1] (NWBFileGeneralExtracellularEphysElectrodes attribute) (PlaneSegmentation attribute), [1] (RepetitionsTable attribute), [1] (SequentialRecordingsTable attribute), [1] (SimultaneousRecordingsTable attribute), [1] (SweepTable attribute), [1] (TimeIntervals attribute), [1], [2], [3], [4], [5], [6], [7], [8] (Units attribute), [1]

vector_index (DynamicTable attribute), [1], [2] (TimeIntervals attribute), [1], [2], [3], [4] version (LinkMLSchemaBuild attribute) (Namespace attribute) (SchemaAdapter attribute) version_module_case() (in module nwb_linkml.maps.naming) versions (NamespaceRepo attribute) (NamespacesAdapter property) (NWBPydanticGenerator attribute) virus (NWBFileGeneral attribute) voxel_mask (PlaneSegmentation attribute), [1] voxel_mask_index (PlaneSegmentation attribute), [1]

W

walk() (Adapter method) walk_field_values() (Adapter method) walk_fields() (Adapter method) walk_types() (Adapter method) waveform_filtering (ClusterWaveforms attribute), [1] waveform_mean (ClusterWaveforms attribute), [1] (Units attribute), [1] waveform_sd (ClusterWaveforms attribute), [1] (Units attribute), [1]

waveforms (Units attribute), [1] waveforms_index (Units attribute), [1] waveforms_index_index (Units attribute), [1] weekday() (date method), [1] weight (Subject attribute), [1] whole_cell_capacitance_comp (VoltageClampSeries attribute), [1] whole_cell_series_resistance_comp (VoltageClampSeries attribute), [1] write() (HDF5IO method)

X

x (NWBFileGeneralExtracellularEphysElectrodes attribute)

xy_translation (CorrectedImageStack attribute), [1]

Y

y (NWBFileGeneralExtracellularEphysElectrodes attribute)

year (date attribute), [1]

Z

z (NWBFileGeneralExtracellularEphysElectrodes attribute)

zero_or_many (QuantityEnum attribute) zero_or_one (QuantityEnum attribute)